Line an 8x8-inch baking dish (or anything similar) with parchment paper, letting any excess paper hang over the sides. Set aside.
In a large bowl, whisk together the almond flour, protein powder, and salt. In a small bowl, whisk together the peanut butter, honey, and almond milk until smooth and uniform. Pour the peanut butter mixture into the almond flour mixture, and stir to combine. It will be dry at first, but keep mixing together the dough until it becomes uniform and thick. If needed, add a splash of almond milk, tablespoon by tablespoon, until moist enough to make a dough. Fold in the chocolate chips.
Transfer the mixture to the prepared baking dish, and press down with a silicone spatula to smooth the top. Sprinkle with additional chocolate chips, and place the dish in the freezer for 30 minutes.
Use the sides of the parchment paper to lift the mixture out of the dish and onto a cutting board. Cut into 12 bars.
To Store: Store the bars in an airtight container in the fridge or freezer. They’ll last up to 7 days in the fridge or up to 3 months in the freezer.